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The DCSR team can help you with your image analysis pipeline. The person involved in this is Arianna Ravera, Image Analysis and Machine Learning specialist. Support Overview From a quick question or a quick opinion, to a long project conceived and structured...

Mamba is an alternative to Conda package manager. The main advantage is its speed regarding dependency resolution. Setting up Mamba The proposed installation is based on micromamba and doesn't require any installation on the cluster. You just have to add the...

Rstudio can be run on the Urblauna cluster from within a singularity container, with an interactive interface provided on the web browser of a Guacamole session. Running interactively with Rstudio on the clusters is only meant for testing. Development must be...

R is provided via the DCSR software stack Interactive mode To load R: $> module load r-light $> R # Then you can use R interactively > ... By default, you get the last version available (4.4.1 when this page is written). If you need an older version, yo...

Disclaimer: this page is provided for experimental support only! Disclaimer 2: pay attention to the terms of use provided here! The project home page where you can find the latest information there. Using Alphafold 3 through a container The Apptainer/Singu...

To request S3 bucket you have two options. Either you want to attach it to an existing project or you want to create a new project with S3 storage. Attach S3 bucket to an existing project In that case send an email to helpdesk@unil.ch (with subject starting ...

From Curnagl cluster (command line tools) Rclone   awscli   From your laptop or a workstation Command line tools Following the official documentation, you can install Rclone (https://rclone.org/install/) or awscli (https://docs.aws.amazon.com/cli/latest...

Purpose AWS presigned URLs (or presign keys) are used to grant temporary access to objects in Amazon S3 without requiring the recipient to have AWS security credentials. Here are the main purposes: Download Access: You can generate a presigned URL to allow s...

What is S3? Amazon S3 (Simple Storage Service) is a scalable object storage service used for storing and retrieving any amount of data at any time. It organizes data into containers called “buckets.” Each bucket can store an unlimited number of objects, which...