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At some point, you might have to move data from one project to another one for various reasons. On NAS DCSR, such move is not possible by default because of a technical limitation. So depending on the volume of data to move, there are 2 options. But before go...

Objectives Learn the key concepts and reasoning of parallel computing. Transform sequential code into efficient parallel implementations in Python, Julia, and R. Target audience Any PhD students, post-docs, researchers of UNIL and CHUV who are involved in ...

The DCSR offers image analysis support for the FBM community. Whether you're looking to extract quantitative information, automate a manual task, fix a script, or discuss a new project, you're at the right place! Antony Carrard, bioimage analyst and machine ...

Mamba is an alternative to Conda package manager. The main advantage is its speed regarding dependency resolution. Setting up Mamba The proposed installation is based on micromamba and doesn't require any installation on the cluster. You just have to add the...

Rstudio can be run on the Urblauna cluster from within a singularity container, with an interactive interface provided on the web browser of a Guacamole session. Running interactively with Rstudio on the clusters is only meant for testing. Development must be...

R is provided via the DCSR software stack A tutorial video on using R on the cluster is available here. Interactive mode To load R: $> module load r-light $> R # Then you can use R interactively > ... By default, you get the last version available (4.4...

Disclaimer: this page is provided for experimental support only! Disclaimer 2: pay attention to the terms of use provided here! The project home page where you can find the latest information there. Using Alphafold 3 through a container The Apptainer/Singu...

To request S3 bucket you have two options. Either you want to attach it to an existing project or you want to create a new project with S3 storage. Attach S3 bucket to an existing project In that case send an email to helpdesk@unil.ch (with subject starting ...

From Curnagl cluster (command line tools) Rclone   awscli   From your laptop or a workstation Command line tools Following the official documentation, you can install Rclone (https://rclone.org/install/) or awscli (https://docs.aws.amazon.com/cli/latest...

Purpose AWS presigned URLs (or presign keys) are used to grant temporary access to objects in Amazon S3 without requiring the recipient to have AWS security credentials. Here are the main purposes: Download Access: You can generate a presigned URL to allow s...

What is S3? Amazon S3 (Simple Storage Service) is a scalable object storage service used for storing and retrieving any amount of data at any time. It organizes data into containers called “buckets.” Each bucket can store an unlimited number of objects, which...