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JupyterLab with C++ on the curnagl cluster

High performance computing - HPC Software

... (octave), stata_kernel (stata) and sas_kernel (sas). These instru ...environment in order to isolate and install JupyterLab, the kernels ... and the corresponding dependencies, ...g -c conda-forge The IPyKernel and the xeus-cling kernel for handl...

CryoSPARC

High performance computing - HPC Software

... a port number (you will understand later why it's important). Cry ...oSPARC can be used on Curnagl and take benefit from Nvidia A100 G ...y you must not use those values and they must be modified. 3. Inst ...using your favourite SSH client and follow the next steps. Define ...

BioImage Analysis

Research support

... Arianna Ravera, Image Analysis and Machine Learning specialist. S ...on, to a long project conceived and structured together. Everything ...lated to extracting information and data from your images can be di ... about: Image pre-processing and enhancement Object detection a...

Data management

Research data storage DCSR NAS

...irtual machine, or a lab server and the DCSR NAS The DCSR NAS, or ...age of the Scientific Computing and Research Support Unit", is one ...the LPrD law Art. 4 al. 2. For handling sensitive data, please refe ...erating systems (Windows, MacOS and Ubuntu) The second section exp...

Introduction

Research data storage S3 storage

...torage service used for storing and retrieving any amount of data a ... entities stored in S3. Understanding S3 Bucket structure Buckets .... Each bucket has a unique name and is used to store objects. Obje ...e, making it easier to organize and manage objects. However, these ...

Run MPI with containers

High performance computing - HPC Software

... test Simple container with ucx and openmpi. Bootstrap: docker From ... built with SLURM's PMI support and therefore cannot execute. There ...s requires that you configure and build SLURM --with-pmix. Ver ...Please configure as appropriate and try again. By default OpenMPI ...

Sensitive data on DCSR NAS

Research data storage DCSR NAS

...ta please go to the CI/DCSR "Demande de ressources de recherche" we ... https://requests.dcsr.unil.ch and log in with your EDU-id account ...k on "New request / Nouvelle demande" Don't forget you w ... NAS (see exact addresses below and documentation), and then use a ...

JupyterLab on the curnagl cluster

High performance computing - HPC Software

...e a python virtual environment, and this tutorial covers the instal ... (octave), stata_kernel (stata) and sas_kernel (sas). If the works ...es should be ignored in the commands below. The execution order is ...deactivate Before you can copy and paste the link into your favori...

Profiling Tools

High performance computing - HPC Optimisation, Profiling and Debugging

...z . Then, extract the contents and compile the serial version: ma ...xecutable you want to profile), and we click on OK. Several anal ... We start with Vectorization and Code insights which will give u ...er, it is better to use the command line. The GUI can provide the c...

MATLAB on the clusters

High performance computing - HPC Software

... is only installed on the login and interactive nodes so in order t ...as a limited number of licences and with an HPC cluster it's easy t ...em all. The number of licences and available toolboxes is detailed ...are a number of steps to follow and a few issues to be aware of. L...

Exchange Online : Accès Web & Clients de messagerie

Messagerie Doc publique

...office.com  macOS Le Ci recommande d'utiliser Outlook pour Mac. ...lendrier, Contacts Le Ci recommande d'utiliser les logiciels livré ... plusieurs comptes), nous recommandons fortement l'utilisation d'Ou ...uration Windows Le Ci recommande d'utiliser Outlook sur Windows...

Research - An Introduction to Image Analysis with CNNs in Python

Cours pour le personnel et les doctoran... Cours pour le personnel et les doctoran...

...segmentation, object detection, and image generation (with GAN). In ... you will learn how a CNN works and how it can be applied in practi ...ce in image classification and image segmentation by using Pyt ...e CNNs for image classification and image segmentation Target audi...

Getting Started with OneDrive

Synchronisation de fichiers (OneDrive) Public documentation

...lows you to store, synchronize, and share files. In particular: ... to Microsoft's cloud solutions and, therefore, to OneDrive. Manag ...the web interface to view, add, and share your files. Install a cl ... an app on your mobile devices (Android, iOS) to view and download ...

AlphaFold

High performance computing - HPC Software

...deas on how to separate the CPU and GPU parts: https://github.com/Z ....555035352706909, "predict_and_compile_model_1_pred_0": 124.84 ...0465400218963623, "predict_and_compile_model_2_pred_0": 104.10 ...7761900424957275, "predict_and_compile_model_3_pred_0": 82.079...

Comment se connecter au réseau sans fil (Wi-Fi)

Réseau Wi-Fi Doc publique

...geteduroam pour Windows, iOS et Android et  l'installateur eduroamC ...uration avec eduroamCAT - recommandée Téléchargez le fichier d’ins ...uration avec eduroamCAT - recommandée Téléchargez le profil eduroa ... sur votre appareil iOS. Quand vous êtes à proximité du réseau...

DCSR Software Stack

High performance computing - HPC Software

... commonly used scientific tools and libraries. The software is opti ...make best use of the CPUs, GPUs and high speed Infiniband interconnect. In order to creat ...e use the Spack package manager and Lmod. For information on the de ... stack please see here. Release and lifecycle Each year we provide ...

Running the Isca framework on the cluster

High performance computing - HPC Software

...at varying levels of complexity and realism. The framework is an ou ... the following relevant modules and create a python virtual environ ... f90nml ipykernel Jinja2 numpy pandas pytest sh==1.14.3 tqdm xarray ... Download and install the Isca framework: cd...

Transfer files to/from Curnagl

High performance computing - HPC Using the Clusters

... with the terminal use: scp command If you are familiar with graphi ...erfaces, use: FileZilla scp command scp <FILE_TO_COPY> <FOLDER_WHER ...RE_YOU_PASTE_IT> The latter command refers to a folder transfer. To ...etter than an example to understand this command. Suppose you have ...

Job Templates

High performance computing - HPC Using the Clusters

...s MPI+GPU tasks You can copy and paste the examples to use as a ...on't forget to edit the account and e-mail address as well as which ...allelisation. Based on the code and the CPU architecture we know th ... I increase the number of ranks and threads per rank? How much memo...

Compiling software using cluster libraries

High performance computing - HPC Software

... options to a specific compiler and language, c, c++ and fortran respectively. The last ...where to find the include files and the location of libraries. Thos ...eady be present on the makefile and used on the compilation process ...piler to look for headers files and binary files in special locatio...