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Compiling and running MPI codes
...e the procedure we will compile and run a MPI hello world example f ..., we first need to load the gcc and mvapich2 modules: $ module loa ...t options for linking MPI codes and if you are curious you can run ... a single group of 4 processors and not 4 groups of 1 processor. If...
Messagerie
...artphones) macOS Le CI recommande l'utilisation d'Outlook plutôt ...de connexion s'ouvre et vous demande de saisir votre mot de passe U ...re Informatique de l'Unil recommande l'utilisation d'Outlook sur vo ...e/iPad/iPod Touch) Le Ci recommande d'utiliser les logiciels livré...
General information
...k Attached Storage) storage yet and you would like one, the PI (Pri ...e DCSR has accepted the request and the access has been granted to ...L NAS What are the /D1c, /D2c, and /LTS subdirectories? In your p ...ory you will see at least a D2c and a LTS directory, with the follo...
Database support for humanities
...al watch to provide researchers and research groups in the humaniti ...esearchers to organise, exploit and expose research databases onlin ... The DCSR relies on tools used and supported by a strong community ... (individuals and institutions). These tools are ...
Sandbox containers
...urses/r_python_singularity/ Sandboxes A container image (the .s ...if file) is read only and its contents cannot be changed ...nteractively modify a container and this is what sandboxes are for. Please be aware ...that anything done by hand is not reproducible so all step...
JupyterLab with C++ on the curnagl cluster
... (octave), stata_kernel (stata) and sas_kernel (sas). These instru ...environment in order to isolate and install JupyterLab, the kernels ... and the corresponding dependencies, ...g -c conda-forge The IPyKernel and the xeus-cling kernel for handl...
Storage on Curnagl
...nded for active use by projects and is not a long term store. Clus ...o disk based filesystems (users and work) and one SSD based one (scratch). Wh ... backup the storage is reliable and resilient to disk failure. Th ...pace am I using? For the users and work filesystems the quotacheck...
CryoSPARC
... a port number (you will understand later why it's important). Cry ...oSPARC can be used on Curnagl and take benefit from Nvidia A100 G ...y you must not use those values and they must be modified. 3. Inst ...using your favourite SSH client and follow the next steps. Define ...
BioImage Analysis
... Arianna Ravera, Image Analysis and Machine Learning specialist. S ...on, to a long project conceived and structured together. Everything ...lated to extracting information and data from your images can be di ... about: Image pre-processing and enhancement Object detection a...
AlphaFold
...deas on how to separate the CPU and GPU parts: https://github.com/Z ....555035352706909, "predict_and_compile_model_1_pred_0": 124.84 ...0465400218963623, "predict_and_compile_model_2_pred_0": 104.10 ...7761900424957275, "predict_and_compile_model_3_pred_0": 82.079...
Running the MPAS framework on the cluster
...or developing atmosphere, ocean and other earth-system simulation c ...se in climate, regional climate and weather studies. Compilation ...ing time-varying meteorological and land-surface fields from intermediat ...mulation Create the run folder and link to the binary files cd ${...
Research - Introduction to Linux (commands and tools) for HPC
... use UNIL HPC clusters in a command-line interface mode. Target au ... post-docs, researchers of UNIL and CHUV who need to use UNIL HPC c ...who are not familiar with Linux and command-line interface. Content Use ...t specific permissions to files and directories) Use of simple too...
Sensitive data on DCSR NAS
...ta please go to the CI/DCSR "Demande de ressources de recherche" we ...ch/research-resource-requests/ and log in with your EDU-id account ...k on "New request / Nouvelle demande" Don't forget you w ... NAS (see exact addresses below and documentation), and then use a ...
JupyterLab on the curnagl cluster
...e a python virtual environment, and this tutorial covers the instal ... (octave), stata_kernel (stata) and sas_kernel (sas). If the works ...es should be ignored in the commands below. The execution order is ...deactivate Before you can copy and paste the link into your favori...
Profiling Tools
...z . Then, extract the contents and compile the serial version: ma ...xecutable you want to profile), and we click on OK. Several anal ... We start with Vectorization and Code insights which will give u ...er, it is better to use the command line. The GUI can provide the c...
MATLAB on the clusters
... is only installed on the login and interactive nodes so in order t ...as a limited number of licences and with an HPC cluster it's easy t ...em all. The number of licences and available toolboxes is detailed ...are a number of steps to follow and a few issues to be aware of. L...
Data management
...r a virtual machine/lab server) and the NAS. Accessing DCSR NAS fr ...ick on Network in File explorer and choose "Map network drive…" ...the address of the Samba server and click to finish Step 3: ente ...r your Unil credentials and clikc "OK" username: ad\unil_u...
Exchange Online : Accès Web & Clients de messagerie
...office.com macOS Le Ci recommande d'utiliser Outlook pour Mac. ...lendrier, Contacts Le Ci recommande d'utiliser les logiciels livré ... plusieurs comptes), nous recommandons fortement l'utilisation d'Ou ...uration Windows Le Ci recommande d'utiliser Outlook sur Windows...
Jura to Urblauna Migration
Migration schedule and deadlines Once the Urblauna ...fers a huge gain in performance and capacity so you are encouraged ...ge you to transition to the new and supported DCSR stack. In order ...l data Then select the Storage and Compute bundles - we recommend ...
Transfer files to/from Curnagl
...familiar with terminal/bash command lines: use the `scp` command, see below. 2. You are used t ...below. First option: scp command scp <FILE_TO_COPY> <FOLDER_W ...E_YOU_PASTE_IT> The latter command refers to a folder transfer. To ...a folder, add the recursive command –r after scp. From your own...