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Created 4 years ago by Ewan Roche

Updated 4 years ago by Ewan Roche

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Optimisation, Profiling and Debugging

Profiling Tools

Introduction This tutorial will guide you how to run intel profiling tools in AMD processors, we...

DCSR? Kesako?

How to access the clusters

I'm a PI and would like to use the clusters - what do I do?

How do I ask for help?

Recovering deleted files?

Curnagl

Urblauna

How to run a job on Curnagl

What projects am I part of and what is my default account?

Providing access to external collaborators

Requesting and using GPUs

How do I run a job for more that 3 days?

Access NAS DCSR from the cluster

SSH connection to DCSR cluster

Checkpoint SLURM jobs

Urblauna access and data transfer

Job Templates

Urblauna Guacamole / RDP issues

Urblauna

Transfer files to/from Curnagl

Transfert S3 DCSR to other support

DCSR Software Stack

Old software stack

R on the clusters

Rstudio on the Curnagl cluster

MATLAB on the clusters

Using Conda and Anaconda

Using Mamba to install Conda packages

AlphaFold

Alphafold 3

CryoSPARC

Compiling and running MPI codes

Deep Learning with GPUs

Software local installation

Rstudio on the Urblauna cluster

DCSR GitLab service

Running Busco

How to run LLM models

SWITCHfilesender from the cluster

Filetransfer from the cluster

R on the clusters (old)

Sandbox containers

Course software for decision trees / random forests

Course software for introductory deep learning

JupyterLab on the curnagl cluster

JupyterLab with C++ on the curnagl cluster

Dask on curnagl

Running the Isca framework on the cluster

Running the MPAS framework on the cluster

Run OpenFOAM codes on Curnagl

Compiling software using cluster libraries

Course software for Image Analysis with CNNs

Course software for Text Analysis with LLMs

Performance of LLM backends and models in Curnagl

Run MPI with containers

Profiling Tools

DCSR Courses

Optimisation, Profiling and Debugging

Profiling Tools

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