Software

What is it? The DCSR provides a software environment including commonly used scientific tools an...

The old (Vital-IT) software stack can be accessed on Curnagl via the following commands $ source...

To illustrate the procedure we will compile and run a MPI hello world example from mpitutorial.co...

The full version of MATLAB is only installed on the login and interactive nodes so in order to ru...

Conda is a package manager system for Python and other tools and is widely used in some areas suc...

Mamba is an alternative to Conda package manager. The main advantage is its speed regarding depen...

The training phase of your deep learning model may be very time consuming. To accelerate this pro...

The project home page where you can find the latest information is at https://github.com/deepmind...

R is provided via the DCSR software stack Interactive mode To load R: module load gcc r R # ...

This page gives an example of a local installation of a software, i.e. a software that will be on...

A Singularity container is available for version 4.0.6 of Busco. To run it, you need to proceed a...

Installing new software on Jura is complicated because the cluster does not have Internet access....

Switch Filesender Filesender is a service provided by SWITCH to transfer files over http. Normal...

filetransfer.dcsr.unil.ch https://filetransfer.dcsr.unil.ch is a service provided by the DCSR to...

First of all, if you plan to use CryoSPARC on the cluster, please contact us to get a port number...

Container basics For how to use Singularity/Apptainer containers please see our course at: htt...

In the practicals, we will use only a small dataset and we will need only little computation powe...

In the practicals, we will use only a small dataset and we will need only little computation powe...