Software

What is it? The DCSR provides a software environment including commonly used scientific tools and...

The old (Vital-IT) software stack can be accessed on Curnagl via the following commands $ source...

R is provided via the DCSR software stack Interactive mode To load R: $> module load r-light ...

Rstudio can be run on the curnagl cluster from within a singularity container, with an interactiv...

The full version of MATLAB is only installed on the login and interactive nodes so in order to ru...

Conda is a package manager system for Python and other tools and is widely used in some areas suc...

Mamba is an alternative to Conda package manager. The main advantage is its speed regarding depen...

The project home page where you can find the latest information is at https://github.com/deepmind...

Disclaimer: this page is provided for experimental support only! Disclaimer 2: pay attention to ...

First of all, if you plan to use CryoSPARC on the cluster, please contact us to get a port number...

To illustrate the procedure we will compile and run a MPI hello world example from mpitutorial.co...

The training phase of your deep learning model may be very time consuming. To accelerate this pro...

This page gives an example of a local installation of a software, i.e. a software that will be on...

Rstudio can be run on the Urblauna cluster from within a singularity container, with an interacti...

What is it? The DCSR hosted version control service (https://gitlab.dcsr.unil.ch) is primarily i...

A Singularity container is available for version 4.0.6 of Busco. To run it, you need to proceed a...

This tutorial shows, how to run LLM on UNIL clusters Simple test set up For this simple test, we ...

Switch Filesender Filesender is a service provided by SWITCH to transfer files over http. Normal...

filetransfer.dcsr.unil.ch https://filetransfer.dcsr.unil.ch is a service provided by the DCSR to ...

R is provided via the DCSR software stack Interactive mode To load R: module load r R # Then...

Container basics For how to use Singularity/Apptainer containers please see our course at: htt...

In the practicals, we will use only a small dataset and we will need only little computation powe...

In the practicals, we will use only a small dataset and we will need only little computation powe...

JupyterLab can be run on the curnagl cluster for testing purposes, only as an intermediate step i...

JupyterLab can be run on the curnagl cluster for testing purposes, only as an intermediate step i...

In order to use Dask in Curnagl you have to use the following packages: dask dask-jobqueue Not...

Isca is a framework for the idealized modelling of the global circulation of planetary atmosphere...

The Model for Prediction Across Scales (MPAS) is a collaborative project for developing atmospher...

Script to run OpenFOAM code You are using OpenFOAM on your computer and you need more ressources...

If you see the following error when compiling a code on the cluster: fatal error: XXXX.h: No suc...

You can do the practicals on various computing platforms. However, since the participants may use...

You can do the practicals on various computing platforms. However, since the participants may use...

Introduction This page shows performance of Llama and mistral models on Curnagl hardware. We have...

Simple test Simple container with ucx and openmpi. Bootstrap: docker From: debian:trixie %enviro...